- Upgrading academic work at the university.
- Administratively and technically supervises the Admissions, Registration and Certification Department, the Training Section and the Information and Statistics Department
- Participating in cultural exchange programs, concluding scientific agreements and implementing them
- Establishing relations with institutions of higher education inside and outside Sudan
- Supervision of specialized academic committees
- Accrediting professors and the collaborators from outside the university
- Issuing and certifying graduates certificates
- Supervising the implementation of student admission and registration policies
- Participating in setting of systems and procedures by developing and disseminating curriculum and teaching methods
- Upgrading and developing the curriculum
- Supervising the awarding of scientific degrees and their extraction and accreditation
- Member of the University Council
- Setting lecturers training and qualification plans
- Representing the University in conferences and committees related to scientific affairs
Current Director: Dr. El-Sajad Abdallah Elbadri
Departments of the Secretariat of Scientific Affairs:
- Admission and Registration Department.
- Certificates Academic Register Department.
- Department of Training and Professors’ Affairs.
- Department of Information and Statistics.